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July 10 磷酸化的信息观点--很有意思Editor's Summary9 July 2009 Cellular information processingWhile naked DNA has a relatively static and easy to grasp information capacity — 2 bits per nucleotide—reversible chemical modification at multiple sites in even a single protein encodes a potentially large and so far untractable amount of information. Here Matthew Thomson and Jeremy Gunawardena reduce the 3 Letter: Unlimited multistability in multisite phosphorylation systemsMatthew Thomson & Jeremy Gunawardena doi:10.1038/nature08102 First paragraph | Full Text | PDF (397K) | Supplementary information J.J. collins: 跟memory有关的
Research ArticlesPredictive Behavior Within Microbial Genetic NetworksIlias Tagkopoulos,1,2* Yir-Chung Liu,2,3* Saeed Tavazoie2,3
The homeostatic framework has dominated our understanding of cellular physiology. We question whether homeostasis alone adequately explains microbial responses to environmental stimuli, and explore the capacity of intracellular networks for predictive behavior in a fashion similar to metazoan nervous systems. We show that in silico biochemical networks, evolving randomly under precisely defined complex habitats, capture the dynamical, multidimensional structure of diverse environments by forming internal representations that allow prediction of environmental change. We provide evidence for such anticipatory behavior by revealing striking correlations of Escherichia coli transcriptional responses to temperature and oxygen perturbations—precisely mirroring the covariation of these parameters upon transitions between the outside world and the mammalian gastrointestinal tract. We further show that these internal correlations reflect a true associative learning paradigm, because they show rapid decoupling upon exposure to novel environments.
1 Department of Electrical Engineering, Princeton University, Princeton, NJ 08544, USA.2 Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA. 3 Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA. |
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